ECR Browser User Annotation Database


authors contact email title description URL submitted
view remove M.P.G. Massink m.p.g.massink@umcutrecht.nl SATB2 associated translocation breakpoints Translocation breakpoint annotation from Disruption of SATB2 or its long-range cis-regulation by SOX9 causes a syndromic form PRS
XXXJ.K.Rainger et al. HMG,2014;23;10.
Dec 8, 2014
view remove daniel yana2@mail.med.upenn.edu ECR steve elements Feb 8, 2017
view remove zhaojinjin 2418080044@qq.com shiyan
chr6: 26931900-26931908 name=" T3R" color="255,0,0"
chr6: 26932107-26932115 name=" T3R" color="255,0,0"
chr6: 26935081-26935089 name=" T3R" color="255,0,0"
chr6: 26935134-26935142 name=" T3R" color="255,0,0"
chr6: 26935149-26935160 name=" CAAT" color="0,0,0"
chr6: 26931568-26931575 name=” TBP”color=”20,210,250”
chr6: 26932992-26932999 name=” TBP”color=”20,210,250”
chr6: 26933867-26933873 name=” TBP”color=”20,210,250”
chr6: 26934663-26934669 name=” TBP”color=”20,210,250”
chr6: 26935764-26935770 name=” TBP”color=”20,210,250”
chr6: 26937771-26937777 name=” TBP”color=”20,210,250”
chr6: 26931936-26931945 name=" TATA" color="248,8,197"
chr6: 26931937- 26931951 name=" TATA" color="248,8,197"
chr6: 26932107- 26932114 name=" GR" color="101,14,129"
chr6: 26932684- 26932691 name=" GR" color="101,14,129"
chr6: 26932902- 26932909 name=" GR" color="101,14,129"
chr6: 26933167- 26933174 name=" GR" color="101,14,129" XXXchr6: 26935081- 26935088 name=" GR" color="101,14,129
Nov 26, 2024


authors contact email title description URL submitted
view remove Ivan Ovcharenko ovcharei@ncbi.nlm.nih.gov Candidate tissue-specific enhancers Collection of 7000 candidate tissue-specific enhancers in the human genome generated using the Enhancer Identification approach [see L.A. Pennacchio et al., Genome Research, 17(2), 201-11 (2007) for details]. Tissue-specificity score is given in square brackets for each predicted element. http://www.dcode.org/EI Feb 6, 2008
view remove A.M.MCINTOSH andrew.mcintosh@ed.ac.uk rs17345592 location default_genome="hg18"
default_location="chr5:45681468-45731526"
author="A.M.MCINTOSH"

description="rs17345592 location"
chr5:45701993-45701913 name="rs17345592" color="255,0,0" XXX
Jun 1, 2009
view remove nazaret reveron nazaret@usal.es CpG islands CpG islands UCSC Genome Bioinformatics Aug 10, 2010
view remove nazaret reveron nazaret@usal.es CpG islands UCSC CpG islands UCSC Genome Bioinformatics XXX Aug 10, 2010
view remove Suraj Mukatira suraj.mukatira@stjude.org Prox1 sites on hg18 -FLT4 upstream Feb 7, 2012
view remove Suraj Mukatira suraj_mukatira@yahoo.com Prox1 sites on hg18 -FLT4 upstream Feb 7, 2012
view remove Suraj Mukatira suraj.mukatira@stjude.org Prox1 conserved sites http://ecrbrowser.dcode.org/udb.php?f_view=020713353316160262.hg18.423634 Feb 7, 2012


authors contact email title description URL submitted
view remove Mi Cai gillj@wusm.wustl.edu Snai ChIP-seq binding specificities My Annotation for Snail Binding sites on Mir200b promoter Dec 15, 2009
view remove GGLoots loots1@llnl.gov p300-limb E11.5 p300 Chip-Seq peaks from E11.5 limb buds, published in XXXVisel et al. 2009 Apr 7, 2010
view remove GGLoots loots1@llnl.gov validated limb enhancers from enhancer.lbl.gov enhancer.lbl.gov Apr 7, 2010
view remove G.G. Loots loots1@llnl.gov validated limb enhancers P300 and validated limb enhancer from enhancer.lbl.gov generated by L.Pennacchio
red-P300 XXXblue-validated limb enhancers
enhancer.lbl.gov Apr 9, 2010
view remove A.W.Varley Alan.Varley@UTSouthwestern.edu microRNA 146a the stem-loop of the mouse microRNA 146a Jul 14, 2010
view remove Nasima Mayer nmayer@ucmerced.edu H3K24ac-mouse ChIP-seq binding specificities Sep 18, 2013


authors contact email title description URL submitted
view remove Bargi-Souza P paulascj@gmail.com Computational binding site predictions default_genome="rn4"
default_location=" chr6:26926969-26937789"
author="Bargi-Souza P"

description="Computational binding site predictions"
chr6: 26931900-26931908 name="T3R" color="255,0,0"
chr6: 26932107-26932115 name="T3R" color="255,0,0"
chr6: 26935081-26935089 name="T3R" color="255,0,0"
chr6: 26935134-26935142 name="T3R" color="255,0,0"
chr6: 26935149-26935160 name="CAAT" color="0,0,0"
chr6: 26931568-26931575 name=”TBP”color=”20,210,236”
chr6: 26932992-26932999 name=”TBP”color=”20,210,236”
chr6: 26933867-26933873 name=”TBP”color=”20,210,236”
chr6: 26934663-26934669 name=”TBP”color=”20,210,236”
chr6: 26935764-26935770 name=”TBP”color=”20,210,236”
chr6: 26937771-26937777 name=”TBP”color=”20,210,236”
chr6: 26931936-26931945 name="TATA" color="248,8,197"
chr6: 26931937- 26931951 name="TATA" color="248,8,197"
chr6: 26932107- 26932114 name="GR" color="101,14,129"
chr6: 26932684- 26932691 name="GR" color="101,14,129"
chr6: 26932902- 26932909 name="GR" color="101,14,129"
chr6: 26933167- 26933174 name="GR" color="101,14,129"
chr6: 26935081- 26935088 name="GR" color="101,14,129" XXX
Nov 14, 2019


authors contact email title description URL submitted
view remove Bourc'his Deborah.Bourchis@curie.fr CpG islands Apr 26, 2013
view remove Iain Dykes idykes@well.ox.ac.uk Nodal enhancers Showing approximate locations, based on data obtained from published studies. Jan 14, 2016
view remove Y Yang yuchen.yang@northwestern.edu primers CNS primers on IL33 gene Sep 11, 2019
view remove Yuchen Yang yuchen.yang@northwestern.edu primers selected conserved non-coding regions and primers Mar 29, 2021
view remove J.Odermatt j.odermatt@unibas.ch OXTR alternative Exon1b Apr 23, 2021
view remove Barros, C. F. Carolinafonseca@outlook.com.br Computational binding site predictions default_genome="mm10"
default_location=chr10:85184054-85190054
Author="Barros C. F,Bargi-Souza P"
description="Computational binding site predictions"

chr10:85133003-85133014 name="CAAT"color="0,0,0"
chr10:85135951-85135957 name="TBP"color="0,204,255"
chr10:85136003-85136009 name="TBP"color="0,204,255"
chr10:85161284-85161291 name="TBP"color="0,204,255"
chr10:85135949-85135958 name="TATA"color="255,0,102"
chr10:85136002-85136011 name=“TATA”color=“255,0,102”
chr10:85132755-85132764 name=“EBOX_Q6”color=“255,150,0”
chr10:851611909-85161921 name=“T3_Q6”color= “255,0,0” XXX
Jul 24, 2022